After the old base's destruction, the new Team Rocket HQ was located in the middle of rocky terrain in Pokémon the Series: Ruby and Sapphire.

In The Scheme Team, the front entrance was shown to possess at least four doors, and also had a two-barred gate with the Team Rocket logo prominently displayed.

The full building was seen in The Thief That Keeps on Thieving! and Memories are Made of Bliss!. The base is a lavender complex with two wings, one on each side, that each have two towers on each end, one of the towers possessing a domed roof. The central building was seven stories tall and had at least two flat trapezoid edges jutting out, with the angled portions containing square bumps. The Team Rocket logo was prominently displayed at the top of the central building. The building was mounted with a set of communications arrays, including two communications satellite dishes and an antenna.

Giovanni's office was a massive room with a red carpet, a potted fern plant, a purple office desk, and a row of windows with blinders on them. The double doors into his office were adorned with the Team Rocket logo. Giovanni had a pencil holder, a lamp, and a laptop capable of scanning the contents of a Poké Ball to identify the Pokémon inside.